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Relevant cDNA papers for this study

Brown A, Kai K, May M, Brown D, Roopenian D: ExQuest, a novel method for displaying quantitative gene expression from ESTs. Genomics 2004, 83:528-539.

Liu, D. L., and J. H. Graber (2006) Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation. BMC Bioinformatics 7:10.

Nanxiang Ge, Charles B. Epstein (2004) An Empirical Bayesian Significance Test of cDNA Library Data. Journal of Computational Biology Dec 2004, Vol. 11, No. 6: 1175-1188.

Susko E, Roger AJ (2004) Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys. Bioinformatics, 20 No. 14: 2279-2287.

Stekel DJ, Git Y, Falciani F (2000) The comparison of gene expression from multiple cDNA libraries. Genome Research, 10 No. 12: 2055-2061.

Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Research, 7 No. 10: 986-995.

Yi Xing, Alissa Resch, Christopher Lee (2004) The Multiassembly Problem: Reconstructing Multiple Transcript Isoforms From EST Fragment Mixtures.Genome Research 14:426-441.

Kan Z, Rouchka EC, Gish WR, States DJ (2001) Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Research 11:889-900.

Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL (2002) Full-length messenger RNA sequences greatly improve genome annotation. Genome Biology 3 No. 6 Research0029.

Philipps DL, Park JW, Graveley BR (2004) A computational and experimental approach toward a priori identification of alternatively spliced exons.RNA 10:1838-1844.

Grasso C, Modrek B, Xing Y, Lee C (2004) Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs. Pac. Symp. Biocomp. 2004:29-41.

Heber S, Alekseyev M, Sze SH, Tang H, Pevzner PA (2002) Splicing graphs and EST assembly problem. Bioinformatics 18:S181-188.

Poustka AJ, Groth D, Hennig S, Thamm S, Cameron A, Beck A, Reinhardt R, Herwig R, Panopoulou G, Lehrach H (2003) Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters.Genome Res. 13:2736-2746.

Gupta S, Zink D, Korn B, Vingron M, Haas SA (2004) Genome wide identification and classification of alternative splicing based on EST data. Bioinformatics 20: 2579-2585.

Nadershahi A, Fahrenkrug SC, Ellis LB (2004) Comparison of computational methods for identifying translation initiation sites in EST data. BMC Bioinformatics 5:14.

Unneberg P, Wennborg A, Larsson (2003) Transcript identification by analysis of short sequence tags--influence of tag length, restriction site and transcript database. Nuc. Acids Res. Apr 15; 31 No. 8:2217-26.

T. Yada, Y. Totoki, Y. Takaeda, Y. Sakaki, T. Takagi (2003) DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. Pac. Symp. Biocomp. 8:375-387.

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